Index

_

_MsprimeEngine (class in stdpopsim.engines)

_SLiMEngine (class in stdpopsim.slim_engine)

A

add_dfe() (stdpopsim.Contig method) add_single_site() (stdpopsim.Contig method)

Annotation (class in stdpopsim) asdict() (stdpopsim.Population method) assert_valid() (stdpopsim.Citation method)

B

because() (stdpopsim.Citation method)

C

ChangeMutationFitness (class in stdpopsim) Chromosome (class in stdpopsim) Citation (class in stdpopsim)

clear_dfes() (stdpopsim.Contig method) ConditionOnAlleleFrequency (class in stdpopsim) Contig (class in stdpopsim)

D

DemographicModel (class in stdpopsim) description (stdpopsim.engines._MsprimeEngine attribute) (stdpopsim.slim_engine._SLiMEngine attribute)

DFE (class in stdpopsim) dfe_breakpoints() (stdpopsim.Contig method) download() (stdpopsim.Annotation method) DrawMutation (class in stdpopsim)

E

Engine (class in stdpopsim)

F

fetch_bibtex() (stdpopsim.Citation method)

from_data() (stdpopsim.Genome static method)

G

Genome (class in stdpopsim) get_annotations() (stdpopsim.Species method) get_chromosome() (stdpopsim.Genome method) get_chromosome_annotations() (stdpopsim.Annotation method) get_contig() (stdpopsim.Species method) get_default_engine() (in module stdpopsim)

get_demographic_model() (stdpopsim.Species method) get_dfe() (stdpopsim.Species method) get_engine() (in module stdpopsim) get_sample_sets() (stdpopsim.DemographicModel method) get_samples() (stdpopsim.DemographicModel method) get_species() (in module stdpopsim) get_version() (stdpopsim.Engine method)

I

id (stdpopsim.engines._MsprimeEngine attribute) (stdpopsim.slim_engine._SLiMEngine attribute) is_cached() (stdpopsim.Annotation method)

is_neutral (stdpopsim.Contig property) (stdpopsim.MutationType property) IsolationWithMigration (class in stdpopsim)

M

mean_gene_conversion_fraction (stdpopsim.Genome property) mean_mutation_rate (stdpopsim.Genome property) mean_recombination_rate (stdpopsim.Genome property)

merge() (stdpopsim.Citation static method) mutation_types() (stdpopsim.Contig method) MutationType (class in stdpopsim)

O

origin (stdpopsim.Contig property)

P

PiecewiseConstantSize (class in stdpopsim)

Population (class in stdpopsim)

R

range_gene_conversion_lengths (stdpopsim.Genome property) recap_and_rescale() (stdpopsim.slim_engine._SLiMEngine method)

register_engine() (in module stdpopsim) register_qc() (stdpopsim.DemographicModel method) (stdpopsim.DFE method)

S

selective_sweep() (in module stdpopsim) simulate() (stdpopsim.Engine method) (stdpopsim.engines._MsprimeEngine method) (stdpopsim.slim_engine._SLiMEngine method)

Species (class in stdpopsim) species_contig() (stdpopsim.Contig static method)